Publications

* indicates co-first author. ^ indicates corresponding author.
Total: 47 published papers; 4 currently under review/in revision

 

Under review/in revision (3)

Mahajan V, Rahman S, Viswanadham V, Yuen G, Sun N, Mattoo H, Pillai S, Das J^. (2021), Posted on bioRxiv

Hua X, Li Y, Pentaparthi S, Guo L, McGrail D, Bhat A, Zou R, Xu M, Qi D, Singh A, McGrath F, Huang J, Andrews S, Wu E, Das J, Zhou Y, Sahni N, Yi SS. (2021)

High Dimensional Multi-omics Reveals Unique Characteristics of Early Plasma Administration in Polytrauma Patients with TBI

Junru Wu, Hamed Moheimani, Shimena Li, Upendra K. Kar, Jillian Bonaroti, Richard S. Miller, Brian J. Daley, Brian G. Harbrecht, Jeffrey A. Claridge, Danielle S. Gruen, Herbert A. Phelan, Francis X. Guyette, Matthew D. Neal, Jishnu Das*, Jason L. Sperry*, Timothy R. Billiar*

2022 (6)

Stephanie Grebinoski, Qianxia Zhang, Anthony R Cillo, Sasikanth Manne, Hanxi Xiao, Erin A. Brunazzi, Tracy Tabib, Carly Cardello, Christine G. Lian, George F. Murphy, Robert Lafyatis, E. John Wherry, Jishnu Das, Creg J. Workman, Dario A. A. Vignali,* Published 2022 (in press at Nature Immunology)

Ningappa, M., Rahman, S. A., Higgs, B. W., Ashokkumar, C. S., Sahni, N., Sindhi, R., & Das, J. (2022). A network-based approach to identify expression modules underlying rejection in pediatric liver transplantation. Cell Reports Medicine, 3(4), 100605.

Brauns, E., Azouz, A., Grimaldi, D., Xiao, H., Thomas, S., Nguyen, M., ... & Goriely, S. (2022). Functional reprogramming of monocytes in acute and convalescent severe COVID-19 patients. JCI insight.

Li, D. D., Jawale, C. V., Zhou, C., Lin, L., Trevejo-Nunez, G. J., Rahman, S. A., ... & Biswas, P. S. (2022). Fungal sensing enhances neutrophil metabolic fitness by regulating antifungal Glut1 activity. Cell Host & Microbe, 30(4), 530-544.

Bing, X., Lovelace, T., Bunea, F., Wegkamp, M., Kasturi, S. P., Singh, H., ... & Das, J. (2022). Essential Regression: A generalizable framework for inferring causal latent factors from multi-omic datasets. Patterns, 100473.

Zohar, T., Hsiao, J. C., Mehta, N., Das, J., Devadhasan, A., Karpinski, W., ... & Alter, G. (2022). Upper and lower respiratory tract correlates of protection against respiratory syncytial virus following vaccination of nonhuman primates. Cell host & microbe, 30(1), 41-52.

2021 (3)

Ningappa N, Adenuga N, Ngo K, Mohamed N, Narayanan T, Prasadan K, Ashokkumar C, Das J, Schmitt L, Hartman H, Sehrawat A, Salgado C, Reyes-Mugica M, Gittes G, Lo C, Subramaniam S, Sindhi R (2021), Frontiers in Physiology .

Cillo, A. R., Somasundaram, A., Shan, F., Cardello, C., Workman, C. J., Kitsios, G. D., ... & Vignali, D. A. (2021). People critically ill with COVID-19 exhibit peripheral immune profiles predictive of mortality and reflective of SARS-CoV-2 lung viral burden. Cell Reports Medicine, 2(12), 100476.

Das, J., Fallon, J. K., Timothy, C. Y., Michell, A., Suscovich, T. J., Linde, C., ... & Alter, G. (2021). Delayed fractional dosing with RTS, S/AS01 improves humoral immunity to malaria via a balance of polyfunctional NANP6-and Pf16-specific antibodies. Med, 2(11), 1269-1286.

2020 (8)

Das J, Devadhasan A, Linde C, Broge T, Sassic J, Mangano M, O’ Keefe S, Suscovich TJ, Streeck H, Irrinki A, Pohlmeyer C, Min-Oo G, Lin S, Weiner JA, Cihlar T, Ackerman ME, Julg B, Deeks S, Lauffenburger D, Alter G (2020), PLoS Pathogens 16(10):e1008868

Clotet-Freixas S, McEvoy C, Batruch I, Pastrello C, Kotlyar M, Van J, Arambewela M, Boshart A, Farkona S, Niu Y, Li Y, Famure O, Bozovic A, Kulasingam V, Chen P, Kim J, Chan E, Moshkelgosha S, Rahman S, Das J, Martinu T, Juvet S, Jurisica I, Chruscinski A, John R, Konvalinka A (2020), Journal of the American Society of Nephrology ASN.2020030286

Beck W, Kim D, Das J, Yu H, Marcus B Smolka M, Mao Y (2020), iScience (Cell Press), 101300

Felber B, Lu Z, Hu Z, Valentin A, Rosati M, Remmel C, Weiner J, Carpenter M, Faircloth K, Stanfield-Oakley S, Williams W, Shen X, Tomaras G, LaBranche C, Montefiori D, Trinh H, Rao M, Alam M, Vandergrift N, O’Saunders K, Wang Y, Rountree W, Das J, Alter G, Reed S, Aye P, Schiro F, Pahar B, Dufour J, Veazey R, Marx P, Venzon D, Shaw G, Ferrari G, Ackerman M, Haynes B, Pavlakis G (2020), Cell Reports 31(6): 107624

Suscovich T*, Fallon J*, Das J*, Demas A*, Crain J, Linde C, Michell A, Natarajan H, Arevalo C, Broge T, Linnekin T, Kulkarni V, Lu R, Luedemann C, Marquette M, March S, Weiner JA, Zavala F, Gregory S, Coccia M, Flores-Garcia Y, Ackerman ME, Bergmann-Leitner E, Lauffenburger D, Hendriks J, Sadoff J, Bhatia S, Jongert E, Wilke-Reece U, Alter G. (2020), Science Translational Medicine ;12(553):eabb4757

Boucau J, Das J, Joshi N, Le Gall S. (2020), PLoS Pathogens ;16(3):e1008442.

Lu L*, Das J*, Grace P, Fortune S, Restrepo B, Alter G. (2020), Journal of Infectious Diseases ;222(12), 2093-2102.

Weichselbaum L, Azouz A, Smolen K, Das J, Splittgerber M, Lepida A, Moreno C, Schreiber J, Serste T, Trepo E, Libert F, Gustot T, Goriely S. (2020), Journal of Hepatology ; 73(2): 303-314 

 

2019 (6)

Bin X, Bunea F, Royer M, Das J^. (2019), iScience (Cell Press) 14:125-135

Natarajan N, Vujic A, Das J, Wang AC, Phu KK, Kiehm SH, Ricci-Blair EM, Zhu AY, Vaughan KL, Colman RJ, Mattison JA, Lee RT. (2019), Journal of Clinical Investigation Insight 4(18):e128685

Fragoza R*, Das J*, Wierbowski SD, Liang J, Tran TN, Liang S, Beltran JF, Rivera-Erick CA, Ye K, Wang TY, Yao L, Mort M, Stenson PD, Cooper DN, Wei X, Keinan A, Schimenti JC, Clark AG, Yu H. (2019) Nature Communications ; 10(1):1-15

Jennewein MF, Goldfarb I, Dolatshahi S, Cosgrove C, Noelette FJ, Krykbaeva M, Das J, Sarkar A, Gorman MJ, Fischinger S, Boudreau CM, Brown J, Cooperrider JH, Aneja J, Suscovich TJ, Graham BS, Lauer GM, Goetghebuer T, Marchant A, Lauffenburger D, Kim AY, Riley LE, Alter G. (2019), Cell 178(1):190-201

Ronsard L, Sood V, Yousif AS, Ramesh J, Shankar V, Das J, Sumi N, Rai T, Mohankumar K, Sridharan S, Dorschel A, Ramachandran VG, Banerjea AC. (2019), Scientific Reports 9(1):7594

Hagan T, Cortese M, Rouphael N, Boudreau C, Linde C, Maddur MS, Das J, Wang H, Guthmiller J, Zheng NY, Huang M, Uphadhyay AA, Gardinassi L, Petitdemange C, McCullough MP, Johnson SJ, Gill K, Cervasi B, Zou J, Bretin A, Hahn M, Gewirtz AT, Bosinger SE, Wilson PC, Li S, Alter G, Khurana S, Golding H, Pulendran B (2019) Cell ; 178(6): 1313-1328

 

2018 (8)

Goetghebuer T*, Smolen K*, Adler C*, Das J*, McBride T, Smits G, Lecomte S, Haelterman E, Barlow P, Piedra PA, van der Klis F, Kollmann TR, Lauffenburger DA, Alter G, Levy J, Marchant A (2018). Clinical Infectious Diseases 68(7): 1193-1203

Gunn BM, Yu WH, Karim MM, Brannan JM, Herbert AS, Wec AZ, Halfmann PJ, Fusco ML, Schendel SL, Gangavarapu K, Krause T, Qiu X, He S, Das J, Suscovich TJ, Lai J, Chandran K, Zeitlin L, Crowe JE Jr, Lauffenburger D, Kawaoka Y, Kobinger GP, Andersen KG, Dye JM, Saphire EO, Alter G (2018), Cell Host & Microbe 24(2):221-233.

Ackerman M^, Das J, Pittala S, Broge T, Linde C, Suscovich TJ, Brown EP, Bradley T, Natarajan H, Lin S, Sassic JK, O'Keefe S, Mehta N, Goodman D, Sips M, Weiner JA, Tomaras GD, Haynes BF, Lauffenburger DA, Bailey-Kellogg C, Roederer M, Alter G (2018), Nature Medicine 24(10):1590-1598

Serroukh Y, Gu-Trantien C, Hooshiar Kashani B, Defrance M, Vu Manh TP, Azouz A, Detavernier A, Hoyois A, Das J, Bizet M, Pollet E, Tabbuso T, Calonne E, van Gisbergen K, Dalod M, Fuks F, Goriely S, Marchant A (2018), eLife 7: e30496.

Miller-Novak L, Das J, Musich TA, Demberg T, Weiner JA, Venzon DJ, Mohanram V, VargasInchaustegui DA, Tuero I, Ackerman ME, Alter G, Robert-Guroff M (2018), Journal of Virology 92(19): e00721-18.

Sadanand S*, Das J*, Chung AW*, Schoen MK, Lane S, Suscovich TJ, Streeck H, Smith DM, Little SJ, Lauffenburger DA, Richman DD, Alter G (2018), AIDS 32(4):443-450.

Gaidukov L, Wroblewska L, Teague B, Nelson T, Zhang X, Liu Y, Jagtap K, Mamo S, Tseng WA, Lowe A, Das J, Bandara K, Baijuraj S, Summers NM, Lu TK, Zhang L, Weiss R (2018), Nucleic Acids Research 46(8): 4072-4086.

Singh S, Ramírez-Salazar EG, Doueiri R, Valentin A, Rosati M, Hu X, Keele BF, Shen X, Tomaras GD, Ferrari G, LaBranche C, Montefiori DC, Das J, Alter G, Trinh HV, Hamlin C, Rao M, Dayton F, Bear J, Chowdhury B, Alicea C, Lifson JD, Broderick KE, Sardesai NY, Sivananthan SJ, Fox CB, Reed SG, Venzon DJ, Hirsch VM, Pavlakis GN, Felber BK (2018), Journal of Virology 92(15): pii: e00281-18.

 

2016 (2)

Vo T*, Das J*, Meyer MJ*, Cordero NA, Akturk N, Wei X, Fair BJ, Degatano AG, Fragoza R, Liu LG, Matsuyama A, Trickey M, Horibata S, Grimson A, Yamano H, Yoshida M, Roth FP, Pleiss JA, Xia Y, Yu H (2016), Cell, 164(1): 310-323.

Meyer M, Lapcevic R, Romero A, Yoon M, Das J, Beltrán JF, Mort M, Stenson PD, Cooper DN, Paccanaro A, Yu H (2016), Human Mutation 37(5): 447-456.

 

2015 (3)

Das J, Gayvert KM, Bunea F, Wegkamp MH, Yu H (2015), BMC Genomics 16: 263.

de Oliviera FB, Kim D, Cussiol JR, Das J, Jeong MC, Doerfler L, Schmidt KH, Yu H, Smolka MB (2015), Molecular Cell 57(6): 1124-1132.

Das J, Meyer MJ, Yu H (2015), Cell Systems 1(5): 312-313.

 

2014 (4)

Wei X* , Das J* , Fragoza R*, Liang J, Bastos de Oliveira FM, Lee HR, Wang X, Mort M, Stenson PD, Cooper DN, Lipkin SM, Smolka MB, Yu H (2014), PLoS Genetics 10(12): e1004819.

Das J, Lee HR, Sagar A, Fragoza R, Liang J, Wei X, Wang X, Mort M, Stenson PD, Cooper DN, Yu H (2014), Human Mutation 35(5): 585-593.

Das J, Fragoza R, Lee HR, Cordero NA, Guo Y, Meyer MJ, Vo TV, Wang X, Yu H (2014), Molecular BioSystems 10(1): 9-17

Das J, Gayvert KM, Yu H (2014), Cancer Informatics Suppl. 5: 85-88.

 

2013 (4)

Das J, Vo TV, Wei X, Mellor JC, Tong V, Degatano AG, Wang X, Wang L, Cordero NA, Kruer-Zerhusen N, Matsuyama A, Pleiss JA, Lipkin SM, Yoshida M, Roth FP, Yu H (2013), Science Signaling 6, ra38. 

Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A, Das J, Abyzov A, Balasubramanian S, Beal K, Chakravarty D, Challis D, Chen Y, Clarke D, Clarke L, Cunningham F, Evani US, Flicek P, Fragoza R, Garrison E, Gibbs R, Gümüş ZH, Herrero J, Kitabayashi N, Kong Y, Lage K, Liluashvili V, Lipkin SM, MacArthur DG, Marth G, Muzny D, Pers TH, Ritchie GRS, Rosenfeld JA, Sisu C, Wei X, 3 Wilson M, Xue Y, Yu F, Dermitzakis ET, Yu H, Rubin MA, Tyler-Smith C, Gerstein M (2013), Science 342 (6154), 1235587.

Meyer M*, Das J*, Wang X*, Yu H (2013),  Bioinformatics 29(12): 1577-1579.

Guo Y, Wei X, Das J, Grimson A, Lipkin SM, Clark AG, Yu H (2013), American Journal of Human Genetics 3(1):78-89.

 

2012 (3)

Das J and Yu H (2012), BMC Systems Biology 6(1): 92.

Das J, Mohammed J, Yu H (2012), Bioinformatics 28(14): 1873-1878.

Wang X*, Wei X*, Thijssen B*, Das J*, Lipkin SM, Yu H (2012), Nature Biotechnology 30(2): 159-164.